Here you will find some documents, codes, etc. of interest.
Dept. Genetics CHU Liège
I. FastQ.gz Files Managment Tool (deziping, pooling and archiving).
Developped for Windows 64 platforms
Requires:
Perl (click here to download 5.22, record and execute)
Some Perl modules installed (cpan install <module>)
7-Zip from command line installed (see Manual for more info.) Click Here for executable.
And
Version 1, issue 1
FastQ.gz files managment Perl Code:FetchFastQgz_v1i1.pl
FastQ.gz files manual: FastQgz_Manual.pdf
II. Sample Tracker (sample traceability KASP Fluo vs. NGS SeqNext)
Developped for Windows 7 or higher OS platforms with MS-Excel 2007 or higher installed.
Requires additionally:
Perl (click here to download 5.22, record and execute)
Some Perl modules installed (cpan install <module>; see manual)
And
Version 1, issue 1 (Max 48 SNPs)
Perl Code (English version: Decimal by dot): Click Here
Perl Code (French version: Decimal by comma): Click Here
MS-Excel Template (English Version): Click Here
SNPs Table: Click Here
User Manual (pptx): Click Here
SOP: Click Here
Some Test files for testing purposes:
Test KASP: Click Here
Test01 NGS SeqNext: Click Here
Test02 NGS SeqNext: Click Here
Test03 NGS SeqNext: Click Here
Test04 NGS SeqNext: Click Here
Test05 NGS SeqNext: Click Here
Test06 NGS SeqNext: Click Here
Test07 NGS SeqNext: Click Here
And finally the Output ms-excel workbook you should be able to generate from all of these: Click Here